Variant report

Variant rs12341698
Chromosome Location chr9:6645251-6645252
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:6642200-6645600 Weak transcription Hela-S3 cervix
2 chr9:6643000-6647000 Active TSS GM12878-XiMat blood
3 chr9:6643400-6646600 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
4 chr9:6643600-6646800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr9:6643800-6648000 Active TSS H9 Cell Line embryonic stem cell
6 chr9:6644000-6645600 Bivalent Enhancer Fetal Thymus thymus
7 chr9:6644000-6646200 Active TSS Cortex derived primary cultured neurospheres brain
8 chr9:6644000-6646400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
9 chr9:6644000-6646400 Active TSS Fetal Brain Female brain
10 chr9:6644000-6646600 Bivalent/Poised TSS NHEK skin
11 chr9:6644000-6646800 Active TSS ES-UCSF4 Cell Line embryonic stem cell
12 chr9:6644200-6645600 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
13 chr9:6644200-6645600 Bivalent Enhancer Fetal Muscle Trunk muscle
14 chr9:6644200-6645600 Bivalent Enhancer Fetal Muscle Leg muscle
15 chr9:6644200-6645600 Enhancers Gastric stomach
16 chr9:6644200-6645600 Enhancers Lung lung
17 chr9:6644200-6646200 Bivalent/Poised TSS Brain Dorsolateral Prefrontal Cortex brain
18 chr9:6644200-6646400 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr9:6644200-6646400 Active TSS Brain Angular Gyrus brain
20 chr9:6644200-6646400 Active TSS Brain Hippocampus Middle brain
21 chr9:6644200-6646600 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr9:6644200-6646600 Active TSS Brain Anterior Caudate brain
23 chr9:6644200-6646600 Active TSS Brain Cingulate Gyrus brain
24 chr9:6644200-6646600 Active TSS Brain Inferior Temporal Lobe brain
25 chr9:6644200-6646800 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
26 chr9:6644200-6647200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
27 chr9:6644400-6645800 Bivalent/Poised TSS Brain Substantia Nigra brain
28 chr9:6644400-6645800 Bivalent Enhancer Sigmoid Colon Sigmoid Colon
29 chr9:6644400-6646200 Active TSS Right Atrium heart
30 chr9:6644400-6646600 Bivalent/Poised TSS Rectal Mucosa Donor 29 rectum
31 chr9:6644400-6647000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr9:6644600-6645600 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
33 chr9:6644600-6646000 Bivalent Enhancer Primary monocytes fromperipheralblood blood
34 chr9:6644600-6646200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr9:6644600-6646600 Active TSS Pancreatic Islets Pancreatic Islet
36 chr9:6644600-6647000 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
37 chr9:6644800-6645400 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr9:6644800-6645400 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr9:6644800-6645400 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood
40 chr9:6644800-6645400 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
41 chr9:6644800-6645400 Enhancers Pancreas Pancrea
42 chr9:6644800-6645800 Bivalent/Poised TSS Foreskin Melanocyte Primary Cells skin01 Skin
43 chr9:6644800-6646000 Flanking Bivalent TSS/Enh Breast Myoepithelial Primary Cells Breast
44 chr9:6644800-6646000 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr9:6644800-6646000 Flanking Active TSS Right Ventricle heart
46 chr9:6644800-6646400 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin03 Skin
47 chr9:6644800-6646400 Bivalent/Poised TSS Rectal Mucosa Donor 31 rectum
48 chr9:6645000-6645400 Bivalent Enhancer IMR90 fetal lung fibroblasts Cell Line lung
49 chr9:6645000-6645400 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr9:6645000-6645600 Bivalent Enhancer Primary T helper memory cells from peripheral blood 1 blood

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