Variant report

Variant	rs12345485
Chromosome Location	chr9:110653812-110653813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12335733	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335764	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12336666	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12336725	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13293417	0.80[EUR][1000 genomes]
rs1929273	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4535795	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs944471	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110649200-110657000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:110651600-110656800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:110651600-110656800	Weak transcription	Right Atrium	heart
6	chr9:110652200-110657000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:110653200-110654400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:110653800-110656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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