Variant report

Variant	rs1929273
Chromosome Location	chr9:110658115-110658116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110656736..110659365-chr9:110662129..110664911,2	K562	blood:
2	chr9:110652589..110655331-chr9:110657909..110660520,2	K562	blood:
3	chr9:110251858..110254547-chr9:110657467..110659406,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10122145	0.83[YRI][hapmap]
rs12335733	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12335764	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12336666	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12336725	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12345485	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13293417	0.83[EUR][1000 genomes]
rs1361370	0.83[CEU][hapmap]
rs2039802	0.83[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.80[YRI][hapmap]
rs4535795	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66563205	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7045297	0.87[GIH][hapmap];0.84[YRI][hapmap]
rs944471	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:110656200-110659400	Enhancers	Fetal Stomach	stomach
3	chr9:110656600-110658800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:110656600-110659200	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:110656600-110659400	Enhancers	Fetal Muscle Leg	muscle
6	chr9:110656800-110659000	Enhancers	Colon Smooth Muscle	Colon
7	chr9:110656800-110659400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:110657000-110658200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:110657000-110658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:110657000-110658400	Enhancers	Ovary	ovary
11	chr9:110657000-110658400	Enhancers	NHDF-Ad	bronchial
12	chr9:110657200-110658200	Enhancers	Adipose Nuclei	Adipose
13	chr9:110657200-110658200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:110657200-110659800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr9:110657200-110660800	Weak transcription	Fetal Intestine Small	intestine
16	chr9:110657200-110661200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:110657200-110661600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:110657600-110658600	Enhancers	Fetal Lung	lung
19	chr9:110657600-110659200	Enhancers	HMEC	breast
20	chr9:110657800-110658400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:110657800-110658400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:110658000-110658200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:110658000-110658200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:110658000-110658200	Enhancers	HSMMtube	muscle
25	chr9:110658000-110658400	Enhancers	Esophagus	oesophagus
26	chr9:110658000-110658400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr9:110658000-110659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:110658000-110668000	Weak transcription	Placenta	Placenta

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