Variant report

Variant	rs66563205
Chromosome Location	chr9:110667305-110667306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110666092..110668154-chr9:110669795..110672142,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10979107	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12335733	0.85[AMR][1000 genomes]
rs12335764	0.85[AMR][1000 genomes]
rs12336666	0.84[AMR][1000 genomes]
rs12336725	0.82[AMR][1000 genomes]
rs13293417	0.96[EUR][1000 genomes]
rs1361370	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1929273	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2039802	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4535795	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7029651	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs944471	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110658000-110668000	Weak transcription	Placenta	Placenta
2	chr9:110661600-110670000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110662200-110667600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:110666800-110668600	Enhancers	Brain Germinal Matrix	brain
5	chr9:110666800-110668800	Enhancers	Brain Angular Gyrus	brain
6	chr9:110666800-110669200	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:110666800-110669800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:110666800-110670000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr9:110666800-110670400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:110666800-110670800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:110667000-110668000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:110667000-110668400	Enhancers	Fetal Lung	lung
13	chr9:110667000-110668600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:110667000-110668800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:110667000-110668800	Enhancers	Adipose Nuclei	Adipose
16	chr9:110667000-110668800	Enhancers	Fetal Stomach	stomach
17	chr9:110667000-110669000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:110667000-110669200	Enhancers	Primary B cells from cord blood	blood
19	chr9:110667000-110670400	Enhancers	Brain Hippocampus Middle	brain
20	chr9:110667000-110671000	Enhancers	Brain Cingulate Gyrus	brain
21	chr9:110667200-110668800	Enhancers	Brain Anterior Caudate	brain
22	chr9:110667200-110669000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:110667200-110669000	Enhancers	Brain Substantia Nigra	brain

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