Variant report

Variant	rs12335733
Chromosome Location	chr9:110650284-110650285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10122145	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12335764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336666	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12336725	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12345485	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1929273	0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2039802	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs4535795	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66563205	0.85[AMR][1000 genomes]
rs7045297	0.83[CEU][hapmap];0.87[GIH][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs944471	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12335733	RAD23B	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110644400-110651000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:110646200-110651000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:110646400-110651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:110646800-110652600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:110649200-110651000	Weak transcription	Right Atrium	heart
8	chr9:110649200-110657000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:110649400-110651000	Weak transcription	Ovary	ovary
10	chr9:110649800-110650800	Weak transcription	Adipose Nuclei	Adipose
11	chr9:110649800-110651000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:110650200-110650600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links