Variant report

Variant	rs2039802
Chromosome Location	chr9:110688855-110688856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10979107	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13293417	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1361370	1.00[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416839	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs1888616	0.93[EUR][1000 genomes]
rs1929273	0.83[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.80[YRI][hapmap]
rs1929280	0.91[MKK][hapmap];0.90[YRI][hapmap]
rs66563205	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7029651	0.87[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7030786	0.89[YRI][hapmap]
rs944475	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs944476	0.85[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2039802	RAD23B	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110685400-110691800	Weak transcription	Fetal Stomach	stomach
2	chr9:110687000-110694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:110688200-110689400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110688800-110689000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:110688800-110689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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