Variant report

Variant	rs7029651
Chromosome Location	chr9:110681913-110681914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10979107	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13293417	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1361370	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1416839	0.82[YRI][hapmap]
rs1888616	0.87[EUR][1000 genomes]
rs1929280	0.84[YRI][hapmap]
rs2039802	0.87[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66563205	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030786	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs944471	0.80[AFR][1000 genomes]
rs944475	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs944476	0.89[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110679800-110682000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr9:110680000-110682400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110680800-110682000	Enhancers	Stomach Mucosa	stomach
4	chr9:110681000-110682000	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr9:110681000-110682200	Enhancers	Fetal Stomach	stomach
6	chr9:110681200-110682000	Enhancers	Fetal Lung	lung
7	chr9:110681200-110682000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:110681200-110682200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:110681400-110682400	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:110681600-110682200	Enhancers	Brain Angular Gyrus	brain
11	chr9:110681600-110682200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:110681600-110682200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:110681800-110682200	Enhancers	Brain Anterior Caudate	brain
14	chr9:110681800-110682200	Enhancers	Brain Substantia Nigra	brain
15	chr9:110681800-110684800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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