Variant report

Variant	rs944476
Chromosome Location	chr9:110681931-110681932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:110681840-110681990	AG10803	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110250543..110252751-chr9:110679811..110682392,3	MCF-7	breast:

Variant related genes	Relation type
RNA5SP293	TF binding region
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10739249	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10759262	0.86[ASN][1000 genomes]
rs10759264	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10759265	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10759266	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816585	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10816586	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13293417	0.82[AFR][1000 genomes]
rs1339764	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1339765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416839	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1929277	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1929279	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1929280	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1970403	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999349	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2039802	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs2094919	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2094920	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2104825	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4978644	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4978650	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4978651	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7023709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029651	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7030786	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7031148	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7040902	0.85[ASN][1000 genomes]
rs7047831	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853326	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7858147	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7873668	0.85[ASN][1000 genomes]
rs944473	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs944475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110679800-110682000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr9:110680000-110682400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110680800-110682000	Enhancers	Stomach Mucosa	stomach
4	chr9:110681000-110682000	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr9:110681000-110682200	Enhancers	Fetal Stomach	stomach
6	chr9:110681200-110682000	Enhancers	Fetal Lung	lung
7	chr9:110681200-110682000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:110681200-110682200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:110681400-110682400	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:110681600-110682200	Enhancers	Brain Angular Gyrus	brain
11	chr9:110681600-110682200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:110681600-110682200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:110681800-110682200	Enhancers	Brain Anterior Caudate	brain
14	chr9:110681800-110682200	Enhancers	Brain Substantia Nigra	brain
15	chr9:110681800-110684800	Weak transcription	Colon Smooth Muscle	Colon

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