Variant report

Variant	rs13293417
Chromosome Location	chr9:110664248-110664249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10979107	0.86[EUR][1000 genomes]
rs12345485	0.80[EUR][1000 genomes]
rs1361370	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1416839	0.83[YRI][hapmap]
rs1888616	0.81[EUR][1000 genomes]
rs1929273	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1929277	0.80[AFR][1000 genomes]
rs1929280	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs1999349	0.81[AFR][1000 genomes]
rs2039802	0.91[CEU][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2094919	0.80[AFR][1000 genomes]
rs2094920	0.81[AFR][1000 genomes]
rs4978644	0.80[AFR][1000 genomes]
rs66563205	0.96[EUR][1000 genomes]
rs7029651	0.91[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7030786	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs944471	0.83[AFR][1000 genomes]
rs944475	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs944476	0.85[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110658000-110668000	Weak transcription	Placenta	Placenta
2	chr9:110661600-110670000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110661800-110666800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110662200-110667600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:110664000-110667000	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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