Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103479629..103481614-chr9:103484023..103486115,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10512277	0.82[EUR][1000 genomes]
rs10819811	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10989220	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10989225	0.82[EUR][1000 genomes]
rs10989226	0.82[EUR][1000 genomes]
rs12339177	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12350460	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16919347	0.82[EUR][1000 genomes]
rs4743414	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743415	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743420	0.83[EUR][1000 genomes]
rs58672360	0.82[EUR][1000 genomes]
rs62577651	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62577652	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7022939	0.87[CEU][hapmap];0.81[CHB][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7851200	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7853739	0.82[EUR][1000 genomes]
rs7860644	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9299341	0.87[CEU][hapmap];0.81[CHB][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs9721433	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886878	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036417	chr9:103478028-103509840	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3410064	chr9:103478731-103483729	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12346541	MURC	cis	parietal	SCAN
rs12346541	C9orf102	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103478000-103481000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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