Variant report

Variant	rs62577651
Chromosome Location	chr9:103483349-103483350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10512277	0.82[EUR][1000 genomes]
rs10819811	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10989220	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10989225	0.82[EUR][1000 genomes]
rs10989226	0.82[EUR][1000 genomes]
rs12339177	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346541	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12347141	0.89[ASN][1000 genomes]
rs12350460	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16919347	0.82[EUR][1000 genomes]
rs4743414	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4743415	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743420	0.83[EUR][1000 genomes]
rs58672360	0.82[EUR][1000 genomes]
rs62577652	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7022939	0.82[EUR][1000 genomes]
rs7851200	0.83[AMR][1000 genomes]
rs7853739	0.82[EUR][1000 genomes]
rs7860644	0.87[AMR][1000 genomes]
rs9299341	0.82[EUR][1000 genomes]
rs9721433	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9886878	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036417	chr9:103478028-103509840	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3410064	chr9:103478731-103483729	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103482800-103483600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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