Variant report

Variant	rs12411389
Chromosome Location	chr10:44311711-44311712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793496	0.85[CHB][hapmap]
rs10793497	0.84[CHB][hapmap]
rs10793498	0.85[CHB][hapmap]
rs10899909	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10899910	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10899917	0.81[ASN][1000 genomes]
rs12220592	0.86[ASN][1000 genomes]
rs1537796	0.81[ASN][1000 genomes]
rs1540966	0.81[ASN][1000 genomes]
rs1540968	0.81[ASN][1000 genomes]
rs2094070	0.83[CHB][hapmap]
rs3750724	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4245610	0.81[ASN][1000 genomes]
rs7916028	0.81[ASN][1000 genomes]
rs7922745	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44305200-44311800	Weak transcription	Right Atrium	heart
2	chr10:44305200-44312000	Weak transcription	Ovary	ovary
3	chr10:44305200-44312200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
5	chr10:44309400-44313400	Enhancers	NHDF-Ad	bronchial
6	chr10:44309600-44313400	Enhancers	NHLF	lung
7	chr10:44309800-44312000	Enhancers	Osteobl	bone
8	chr10:44309800-44312800	Enhancers	NH-A	brain
9	chr10:44309800-44314800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:44310000-44313400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:44310200-44313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44310400-44311800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:44310400-44312200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:44310400-44313000	Enhancers	Fetal Thymus	thymus
15	chr10:44310400-44313400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:44310600-44311800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:44310600-44313400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:44310800-44311800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:44310800-44312600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr10:44310800-44313400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr10:44311000-44311800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:44311000-44311800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:44311000-44312000	Enhancers	Psoas Muscle	Psoas
26	chr10:44311000-44313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:44311000-44313400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:44311000-44314000	Enhancers	Left Ventricle	heart
29	chr10:44311000-44314600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:44311000-44314600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:44311200-44311800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:44311200-44311800	Flanking Active TSS	Dnd41	blood
33	chr10:44311200-44312200	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr10:44311200-44312200	Enhancers	Liver	Liver
35	chr10:44311200-44312800	Enhancers	Fetal Muscle Leg	muscle
36	chr10:44311200-44313200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:44311200-44313800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:44311400-44311800	Enhancers	Fetal Heart	heart
39	chr10:44311400-44311800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:44311400-44312000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:44311400-44312000	Enhancers	Stomach Smooth Muscle	stomach
42	chr10:44311400-44312200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr10:44311400-44312200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:44311400-44312400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:44311400-44312400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:44311400-44312600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:44311600-44311800	Flanking Active TSS	Thymus	Thymus
48	chr10:44311600-44312400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:44311600-44312400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr10:44311600-44312400	Flanking Active TSS	GM12878-XiMat	blood

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