Variant report

Variant	rs10793496
Chromosome Location	chr10:44288347-44288348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44280117..44282923-chr10:44287063..44289824,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10751337	0.88[MEX][hapmap]
rs10751339	0.84[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10751340	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10751342	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10751344	0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs10751345	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793477	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs10793478	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10793479	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793491	0.84[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs10793492	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793493	0.88[ASN][1000 genomes]
rs10793494	0.83[ASN][1000 genomes]
rs10793495	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899903	0.87[ASN][1000 genomes]
rs10899904	0.85[ASN][1000 genomes]
rs10899906	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10899913	0.95[ASN][1000 genomes]
rs10899916	0.88[ASN][1000 genomes]
rs10899917	0.84[ASN][1000 genomes]
rs11238672	0.84[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12254433	0.88[ASN][1000 genomes]
rs1335887	0.85[ASN][1000 genomes]
rs1335888	0.85[ASN][1000 genomes]
rs1335896	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1537796	0.84[ASN][1000 genomes]
rs1537800	0.84[CEU][hapmap]
rs1540966	0.84[ASN][1000 genomes]
rs1540968	0.84[ASN][1000 genomes]
rs1998747	0.85[ASN][1000 genomes]
rs2009557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2863760	0.95[ASN][1000 genomes]
rs2863762	0.85[ASN][1000 genomes]
rs2902565	0.85[ASN][1000 genomes]
rs2902566	0.85[ASN][1000 genomes]
rs3750724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3901013	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245610	0.84[ASN][1000 genomes]
rs4536161	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4536162	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948756	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4948758	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4948773	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948777	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948778	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593368	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077599	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910172	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910184	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916028	0.84[ASN][1000 genomes]
rs7922745	0.84[ASN][1000 genomes]
rs871832	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs980445	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10793496	GPRIN2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
4	chr10:44286800-44289000	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44286800-44292400	Weak transcription	Ovary	ovary
6	chr10:44287000-44289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44287000-44289600	Weak transcription	Osteobl	bone
8	chr10:44287200-44289000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:44287600-44290000	Enhancers	Fetal Lung	lung
10	chr10:44288200-44288400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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