Variant report

Variant	rs4948758
Chromosome Location	chr10:44230860-44230861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44222418..44225154-chr10:44227350..44232031,4	K562	blood:
2	chr10:44222418..44225154-chr10:44229616..44232031,2	K562	blood:

Variant related genes	Relation type
ENSG00000271173	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10751337	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10751339	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751340	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751341	0.96[ASN][1000 genomes]
rs10751342	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751345	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793477	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793478	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793479	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793482	0.93[ASN][1000 genomes]
rs10793490	0.87[ASN][1000 genomes]
rs10793492	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793495	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793496	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793497	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793498	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899866	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899867	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899884	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10899886	0.96[ASN][1000 genomes]
rs10899889	0.94[ASN][1000 genomes]
rs10899906	0.81[EUR][1000 genomes]
rs10899909	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11238672	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238680	0.97[ASN][1000 genomes]
rs11238686	0.94[ASN][1000 genomes]
rs11238687	0.94[ASN][1000 genomes]
rs1335895	0.97[ASN][1000 genomes]
rs1335896	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2009557	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3750724	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3901013	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4338479	0.97[ASN][1000 genomes]
rs4536161	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4536162	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948756	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948762	0.94[ASN][1000 genomes]
rs4948773	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7475934	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7901738	0.93[ASN][1000 genomes]
rs7916533	0.97[ASN][1000 genomes]
rs7917980	0.97[ASN][1000 genomes]
rs871832	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs871833	0.89[ASN][1000 genomes]
rs980445	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44228000-44235400	Weak transcription	Right Atrium	heart
2	chr10:44229800-44231000	Weak transcription	NHDF-Ad	bronchial
3	chr10:44230000-44232400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:44230200-44231800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44230200-44231800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:44230200-44231800	Enhancers	Osteobl	bone
7	chr10:44230600-44231200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:44230600-44231800	Enhancers	NHLF	lung
9	chr10:44230800-44231800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links