Variant report

Variant	rs10899866
Chromosome Location	chr10:44207148-44207149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10751339	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751340	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751341	0.84[ASN][1000 genomes]
rs10751342	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793469	0.94[ASN][1000 genomes]
rs10793477	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793478	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793479	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793482	0.81[ASN][1000 genomes]
rs10899860	0.94[ASN][1000 genomes]
rs10899863	0.94[ASN][1000 genomes]
rs10899865	0.94[ASN][1000 genomes]
rs10899867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899886	0.84[ASN][1000 genomes]
rs10899889	0.82[ASN][1000 genomes]
rs11238634	0.94[ASN][1000 genomes]
rs11238639	0.94[ASN][1000 genomes]
rs11238672	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238680	0.84[ASN][1000 genomes]
rs11238686	0.82[ASN][1000 genomes]
rs11238687	0.82[ASN][1000 genomes]
rs1335895	0.84[ASN][1000 genomes]
rs1335896	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2050502	0.94[ASN][1000 genomes]
rs3901013	0.82[EUR][1000 genomes]
rs4338479	0.84[ASN][1000 genomes]
rs4536161	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4536162	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948756	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948758	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948762	0.82[ASN][1000 genomes]
rs4948773	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7094994	0.94[ASN][1000 genomes]
rs7901738	0.81[ASN][1000 genomes]
rs7907917	0.92[ASN][1000 genomes]
rs7916533	0.84[ASN][1000 genomes]
rs7917980	0.84[ASN][1000 genomes]
rs7922095	0.94[ASN][1000 genomes]
rs871832	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs871833	0.80[ASN][1000 genomes]
rs951260	0.94[ASN][1000 genomes]
rs980445	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317585	chr10:44202846-44207644	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44203400-44207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44207000-44207800	Enhancers	Spleen	Spleen

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