Variant report

Variant	rs3901013
Chromosome Location	chr10:44277672-44277673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:44277075-44278056	NB4	blood:	n/a	n/a
2	MXI1	chr10:44277132-44278163	SK-N-SH	brain:	n/a	n/a
3	EP300	chr10:44276552-44278159	SK-N-SH	brain:	n/a	chr10:44277617-44277627
4	KAP1	chr10:44276994-44277693	U2OS	brain:	n/a	n/a
5	POLR2A	chr10:44277426-44277696	U87	brain:	n/a	n/a
6	EBF1	chr10:44277520-44277723	GM12878	blood:	n/a	n/a
7	MYC	chr10:44277454-44278036	NB4	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000234973	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10751339	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10751340	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10751342	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10751344	0.99[ASN][1000 genomes]
rs10751345	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793477	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10793478	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793479	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10793490	0.80[EUR][1000 genomes]
rs10793491	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793492	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793493	0.99[ASN][1000 genomes]
rs10793494	0.93[ASN][1000 genomes]
rs10793495	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793496	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793497	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793498	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899866	0.82[EUR][1000 genomes]
rs10899867	0.82[EUR][1000 genomes]
rs10899884	0.80[EUR][1000 genomes]
rs10899903	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899904	0.99[ASN][1000 genomes]
rs10899906	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899909	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899910	0.87[ASN][1000 genomes]
rs10899913	0.82[ASN][1000 genomes]
rs11238672	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1335887	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335888	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335896	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1998747	0.99[ASN][1000 genomes]
rs2009557	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2094070	0.87[ASN][1000 genomes]
rs2863760	0.82[ASN][1000 genomes]
rs2863762	0.99[ASN][1000 genomes]
rs2902565	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902566	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750724	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536161	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4536162	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4948756	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948758	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4948777	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948778	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6593368	0.87[ASN][1000 genomes]
rs7077599	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7475934	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7910172	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7910184	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs871832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs980445	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44272000-44280800	Weak transcription	Right Atrium	heart
2	chr10:44276000-44278000	Enhancers	Dnd41	blood
3	chr10:44276000-44278000	Enhancers	HSMMtube	muscle
4	chr10:44276600-44278600	Enhancers	Stomach Mucosa	stomach
5	chr10:44276800-44278000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44276800-44278000	Enhancers	Fetal Heart	heart
7	chr10:44276800-44278000	Enhancers	Fetal Intestine Small	intestine
8	chr10:44277000-44277800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44277000-44277800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:44277000-44277800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:44277000-44277800	Enhancers	Fetal Intestine Large	intestine
12	chr10:44277000-44277800	Enhancers	Right Ventricle	heart
13	chr10:44277000-44277800	Enhancers	HSMM	muscle
14	chr10:44277000-44278000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:44277000-44278000	Enhancers	Gastric	stomach
16	chr10:44277000-44278000	Enhancers	Left Ventricle	heart
17	chr10:44277000-44278000	Enhancers	Lung	lung
18	chr10:44277000-44278000	Enhancers	Osteobl	bone
19	chr10:44277000-44278200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:44277000-44278200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:44277000-44278200	Enhancers	Fetal Thymus	thymus
22	chr10:44277000-44278600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:44277000-44278600	Enhancers	Pancreas	Pancrea
24	chr10:44277000-44278800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:44277200-44277800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:44277200-44277800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:44277200-44277800	Enhancers	GM12878-XiMat	blood
28	chr10:44277200-44278000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr10:44277200-44278000	Enhancers	HepG2	liver
30	chr10:44277200-44278800	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:44277400-44277800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:44277400-44277800	Enhancers	Spleen	Spleen
33	chr10:44277400-44277800	Enhancers	NHLF	lung
34	chr10:44277400-44278200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr10:44277600-44278000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:44277600-44278800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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