Variant report

Variant	rs10899906
Chromosome Location	chr10:44287188-44287189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44280117..44282923-chr10:44287063..44289824,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10751339	0.81[EUR][1000 genomes]
rs10751340	0.81[EUR][1000 genomes]
rs10751342	0.81[EUR][1000 genomes]
rs10751344	0.85[ASN][1000 genomes]
rs10751345	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793477	0.80[EUR][1000 genomes]
rs10793478	0.81[EUR][1000 genomes]
rs10793479	0.84[EUR][1000 genomes]
rs10793491	0.85[ASN][1000 genomes]
rs10793492	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793493	0.88[ASN][1000 genomes]
rs10793494	0.83[ASN][1000 genomes]
rs10793495	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793496	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793497	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793498	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899903	0.87[ASN][1000 genomes]
rs10899904	0.85[ASN][1000 genomes]
rs10899909	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899910	1.00[ASN][1000 genomes]
rs10899913	0.95[ASN][1000 genomes]
rs10899916	0.88[ASN][1000 genomes]
rs10899917	0.84[ASN][1000 genomes]
rs11238672	0.81[EUR][1000 genomes]
rs12254433	0.88[ASN][1000 genomes]
rs1335887	0.85[ASN][1000 genomes]
rs1335888	0.85[ASN][1000 genomes]
rs1335896	0.81[EUR][1000 genomes]
rs1537796	0.84[ASN][1000 genomes]
rs1540966	0.84[ASN][1000 genomes]
rs1540968	0.84[ASN][1000 genomes]
rs1998747	0.85[ASN][1000 genomes]
rs2009557	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094070	1.00[ASN][1000 genomes]
rs2863760	0.95[ASN][1000 genomes]
rs2863762	0.85[ASN][1000 genomes]
rs2902565	0.85[ASN][1000 genomes]
rs2902566	0.85[ASN][1000 genomes]
rs3750724	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3901013	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245610	0.84[ASN][1000 genomes]
rs4536161	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4536162	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948756	0.81[EUR][1000 genomes]
rs4948758	0.81[EUR][1000 genomes]
rs4948773	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4948777	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948778	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593368	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077599	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910172	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910184	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916028	0.84[ASN][1000 genomes]
rs7922745	0.84[ASN][1000 genomes]
rs871832	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs980445	0.82[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44286000-44287200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
5	chr10:44286400-44287200	Enhancers	Fetal Lung	lung
6	chr10:44286800-44289000	Weak transcription	Adipose Nuclei	Adipose
7	chr10:44286800-44292400	Weak transcription	Ovary	ovary
8	chr10:44287000-44289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44287000-44289600	Weak transcription	Osteobl	bone

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