Variant report

Variant	rs4536162
Chromosome Location	chr10:44256350-44256351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10751337	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs10751339	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751340	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751341	0.93[ASN][1000 genomes]
rs10751342	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751345	0.92[CEU][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10793477	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793478	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793479	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793480	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10793482	0.94[ASN][1000 genomes]
rs10793490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10793492	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793495	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793496	0.84[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793497	0.83[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793498	0.84[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899866	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899867	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899884	0.82[EUR][1000 genomes]
rs10899886	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10899889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10899906	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899909	0.88[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11238672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238680	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11238686	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11238687	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1335895	0.94[ASN][1000 genomes]
rs1335896	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467836	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1537800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2009557	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3750724	0.84[CEU][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3901013	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4338479	0.94[ASN][1000 genomes]
rs4536161	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948756	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948758	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948762	0.92[ASN][1000 genomes]
rs4948773	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948777	0.82[AFR][1000 genomes]
rs4948778	0.82[AFR][1000 genomes]
rs6593368	0.81[AFR][1000 genomes]
rs7077599	0.82[AFR][1000 genomes]
rs7475934	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7901738	0.94[ASN][1000 genomes]
rs7910172	0.81[AFR][1000 genomes]
rs7910184	0.81[AFR][1000 genomes]
rs7916533	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7917980	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs871832	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871833	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs980445	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44249600-44256800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44256000-44256400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links