Variant report

Variant	rs10899886
Chromosome Location	chr10:44233234-44233235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44231245..44233311-chr10:44233879..44236048,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10751339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10751340	0.98[ASN][1000 genomes]
rs10751341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751342	0.99[ASN][1000 genomes]
rs10751343	0.84[AMR][1000 genomes]
rs10793469	0.80[ASN][1000 genomes]
rs10793477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10793478	0.98[ASN][1000 genomes]
rs10793479	0.98[ASN][1000 genomes]
rs10793480	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10793482	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793483	0.84[AMR][1000 genomes]
rs10793484	0.87[AMR][1000 genomes]
rs10793489	0.82[AMR][1000 genomes]
rs10793490	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10793491	0.82[ASW][hapmap];0.84[LWK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs10899860	0.80[ASN][1000 genomes]
rs10899863	0.80[ASN][1000 genomes]
rs10899865	0.80[ASN][1000 genomes]
rs10899866	0.84[ASN][1000 genomes]
rs10899867	0.85[ASN][1000 genomes]
rs10899889	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899890	0.85[AMR][1000 genomes]
rs10899891	0.80[AMR][1000 genomes]
rs10899893	0.84[AMR][1000 genomes]
rs10899900	0.84[AMR][1000 genomes]
rs10899901	0.84[AMR][1000 genomes]
rs10899903	0.83[AFR][1000 genomes]
rs10899905	0.82[AMR][1000 genomes]
rs1107925	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11238639	0.80[ASN][1000 genomes]
rs11238672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11238680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238686	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238687	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238705	0.82[AMR][1000 genomes]
rs12258494	0.85[AMR][1000 genomes]
rs12570501	0.86[AMR][1000 genomes]
rs1335887	0.83[AFR][1000 genomes]
rs1335888	0.82[AFR][1000 genomes]
rs1335894	0.85[AMR][1000 genomes]
rs1335895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335896	0.98[ASN][1000 genomes]
rs1467835	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1467836	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1467837	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1537797	0.80[AMR][1000 genomes]
rs1537798	0.85[AMR][1000 genomes]
rs1537800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1572377	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17154279	0.86[AMR][1000 genomes]
rs2050502	0.82[ASN][1000 genomes]
rs2050503	0.84[AMR][1000 genomes]
rs2152456	0.86[MEX][hapmap]
rs2297724	0.82[AMR][1000 genomes]
rs2902565	0.83[AFR][1000 genomes]
rs2902566	0.83[AFR][1000 genomes]
rs4080021	0.80[AMR][1000 genomes]
rs4245608	0.84[AMR][1000 genomes]
rs4338479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534528	0.85[AMR][1000 genomes]
rs4536161	0.93[ASN][1000 genomes]
rs4536162	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4948756	0.98[ASN][1000 genomes]
rs4948758	0.96[ASN][1000 genomes]
rs4948759	0.85[AMR][1000 genomes]
rs4948762	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948766	0.85[AMR][1000 genomes]
rs4948767	0.86[AMR][1000 genomes]
rs4948768	0.85[AMR][1000 genomes]
rs4948771	0.82[AMR][1000 genomes]
rs4948772	0.82[AMR][1000 genomes]
rs4948773	0.91[ASN][1000 genomes]
rs4948774	0.84[AMR][1000 genomes]
rs7071189	0.82[AMR][1000 genomes]
rs7093194	0.82[AMR][1000 genomes]
rs7094994	0.80[ASN][1000 genomes]
rs7101084	0.84[AMR][1000 genomes]
rs74138024	0.80[AMR][1000 genomes]
rs74138025	0.85[AMR][1000 genomes]
rs7475934	0.86[ASN][1000 genomes]
rs7901738	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903170	0.91[MEX][hapmap]
rs7911606	0.86[AMR][1000 genomes]
rs7916533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917980	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922095	0.80[ASN][1000 genomes]
rs871832	0.90[ASN][1000 genomes]
rs871833	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs883474	0.86[AMR][1000 genomes]
rs951260	0.80[ASN][1000 genomes]
rs951798	0.84[AMR][1000 genomes]
rs964877	0.84[AMR][1000 genomes]
rs980445	0.98[ASN][1000 genomes]
rs980446	0.85[AMR][1000 genomes]
rs980447	0.81[AMR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44228000-44235400	Weak transcription	Right Atrium	heart
2	chr10:44232000-44233600	Weak transcription	NHDF-Ad	bronchial
3	chr10:44232400-44235400	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44233200-44233400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links