Variant report

Variant	rs10793469
Chromosome Location	chr10:44198303-44198304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44185602..44188536-chr10:44195679..44198454,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10751332	0.87[AMR][1000 genomes]
rs10751339	0.82[ASN][1000 genomes]
rs10751340	0.82[ASN][1000 genomes]
rs10751341	0.80[ASN][1000 genomes]
rs10751342	0.81[ASN][1000 genomes]
rs10793470	0.82[AMR][1000 genomes]
rs10793477	0.89[ASN][1000 genomes]
rs10793478	0.82[ASN][1000 genomes]
rs10793479	0.82[ASN][1000 genomes]
rs10899860	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899861	0.87[AMR][1000 genomes]
rs10899863	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899864	0.84[AMR][1000 genomes]
rs10899865	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899866	0.94[ASN][1000 genomes]
rs10899867	0.95[ASN][1000 genomes]
rs10899886	0.80[ASN][1000 genomes]
rs11238634	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238639	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238672	0.81[ASN][1000 genomes]
rs11238680	0.81[ASN][1000 genomes]
rs12413246	0.88[AMR][1000 genomes]
rs1335895	0.81[ASN][1000 genomes]
rs1335896	0.82[ASN][1000 genomes]
rs2050502	0.98[ASN][1000 genomes]
rs4338479	0.81[ASN][1000 genomes]
rs4948756	0.82[ASN][1000 genomes]
rs7094994	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916533	0.81[ASN][1000 genomes]
rs7917980	0.81[ASN][1000 genomes]
rs7922095	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951260	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980445	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44195800-44203200	Weak transcription	Ovary	ovary
2	chr10:44196000-44198800	Weak transcription	Left Ventricle	heart
3	chr10:44196000-44203800	Weak transcription	Right Atrium	heart
4	chr10:44197000-44198400	Weak transcription	Right Ventricle	heart
5	chr10:44197200-44198600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44197800-44198800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44197800-44200000	Enhancers	Spleen	Spleen
8	chr10:44198000-44198400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44198200-44198400	Enhancers	Fetal Heart	heart
10	chr10:44198200-44198600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr10:44198200-44198600	Enhancers	Pancreas	Pancrea

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