Variant report

Variant	rs10899860
Chromosome Location	chr10:44193912-44193913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44185584..44187183-chr10:44191790..44193996,2	K562	blood:
2	chr10:44193644..44194206-chr10:44668785..44669607,2	MCF-7	breast:
3	chr10:44185266..44187745-chr10:44193521..44195078,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10751339	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10751340	0.82[ASN][1000 genomes]
rs10751341	0.80[ASN][1000 genomes]
rs10751342	0.81[ASN][1000 genomes]
rs10751344	0.86[CEU][hapmap]
rs10751345	0.90[YRI][hapmap]
rs10793469	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793477	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10793478	0.82[ASN][1000 genomes]
rs10793479	0.82[ASN][1000 genomes]
rs10793480	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10793490	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10793491	0.86[CEU][hapmap]
rs10899863	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899865	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899866	0.94[ASN][1000 genomes]
rs10899867	0.95[ASN][1000 genomes]
rs10899886	0.80[ASN][1000 genomes]
rs10899889	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10899904	0.90[CEU][hapmap]
rs10899910	0.82[CEU][hapmap]
rs11238634	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238639	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238672	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11238680	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1335895	0.81[ASN][1000 genomes]
rs1335896	0.82[ASN][1000 genomes]
rs1467835	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1467836	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1467837	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1537800	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2050502	0.98[ASN][1000 genomes]
rs2094070	0.85[CEU][hapmap]
rs4245609	0.86[CEU][hapmap]
rs4338479	0.81[ASN][1000 genomes]
rs4948756	0.82[ASN][1000 genomes]
rs7094994	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907917	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916533	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7917980	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7922095	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951260	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980445	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44188000-44194600	Weak transcription	Ovary	ovary
2	chr10:44188000-44195000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:44188000-44196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44189600-44195400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44191800-44196400	Enhancers	Fetal Heart	heart
6	chr10:44191800-44197000	Enhancers	Right Ventricle	heart
7	chr10:44192400-44194600	Enhancers	Adipose Nuclei	Adipose
8	chr10:44192400-44195400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:44192600-44195800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:44192600-44196000	Weak transcription	Fetal Kidney	kidney
11	chr10:44192600-44196600	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:44192800-44194600	Enhancers	Lung	lung
13	chr10:44192800-44196000	Enhancers	Left Ventricle	heart
14	chr10:44193000-44196000	Enhancers	Right Atrium	heart
15	chr10:44193400-44194600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:44193400-44194600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:44193600-44194000	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:44193600-44194200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:44193600-44194400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:44193600-44194800	Enhancers	Spleen	Spleen
21	chr10:44193800-44195000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:44193800-44196000	Enhancers	Fetal Lung	lung
23	chr10:44193800-44196200	Enhancers	HSMMtube	muscle

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