Variant report

Variant	rs2050502
Chromosome Location	chr10:44203201-44203202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44202572..44204075-chr10:44209232..44212140,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10751339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10751340	0.82[ASN][1000 genomes]
rs10751341	0.82[ASN][1000 genomes]
rs10751342	0.81[ASN][1000 genomes]
rs10793469	0.98[ASN][1000 genomes]
rs10793471	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10793477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10793478	0.82[ASN][1000 genomes]
rs10793479	0.82[ASN][1000 genomes]
rs10793480	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10793490	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10899860	0.98[ASN][1000 genomes]
rs10899863	0.98[ASN][1000 genomes]
rs10899865	0.98[ASN][1000 genomes]
rs10899866	0.94[ASN][1000 genomes]
rs10899867	0.95[ASN][1000 genomes]
rs10899886	0.82[ASN][1000 genomes]
rs10899889	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs11238633	0.80[AMR][1000 genomes]
rs11238634	0.98[ASN][1000 genomes]
rs11238637	0.88[AMR][1000 genomes]
rs11238639	0.98[ASN][1000 genomes]
rs11238672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11238680	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12218690	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1335895	0.82[ASN][1000 genomes]
rs1335896	0.82[ASN][1000 genomes]
rs1467835	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1467836	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1467837	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1537800	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4338479	0.82[ASN][1000 genomes]
rs4948756	0.82[ASN][1000 genomes]
rs60407866	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7094994	0.98[ASN][1000 genomes]
rs7907917	0.96[ASN][1000 genomes]
rs7916533	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7917980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7922095	0.98[ASN][1000 genomes]
rs951259	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs951260	0.98[ASN][1000 genomes]
rs980445	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317585	chr10:44202846-44207644	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44196000-44203800	Weak transcription	Right Atrium	heart
2	chr10:44202600-44204200	Enhancers	Adipose Nuclei	Adipose
3	chr10:44202600-44204200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:44202800-44204400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:44203000-44203400	Enhancers	Right Ventricle	heart
6	chr10:44203000-44203800	Enhancers	Fetal Heart	heart
7	chr10:44203000-44204000	Enhancers	HUVEC	blood vessel
8	chr10:44203000-44204200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44203000-44204200	Enhancers	Left Ventricle	heart
10	chr10:44203000-44204200	Enhancers	Lung	lung
11	chr10:44203000-44204200	Enhancers	Pancreas	Pancrea
12	chr10:44203000-44204200	Enhancers	Spleen	Spleen
13	chr10:44203000-44204600	Enhancers	Osteobl	bone
14	chr10:44203200-44203400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:44203200-44203400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr10:44203200-44204000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:44203200-44204000	Enhancers	Aorta	Aorta
18	chr10:44203200-44204000	Enhancers	NH-A	brain
19	chr10:44203200-44204200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44203200-44204200	Enhancers	Fetal Muscle Leg	muscle
21	chr10:44203200-44204200	Enhancers	Ovary	ovary
22	chr10:44203200-44204600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:44203200-44204600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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