Variant report

Variant	rs12218690
Chromosome Location	chr10:44197382-44197383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44185602..44188536-chr10:44195679..44198454,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10751332	0.98[ASN][1000 genomes]
rs10751337	0.87[ASN][1000 genomes]
rs10751343	0.81[AMR][1000 genomes]
rs10793470	0.94[ASN][1000 genomes]
rs10793471	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793476	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10793483	0.81[AMR][1000 genomes]
rs10899861	0.97[ASN][1000 genomes]
rs10899864	0.98[ASN][1000 genomes]
rs10899890	0.82[ASN][1000 genomes]
rs10899891	0.82[AMR][1000 genomes]
rs10899893	0.81[AMR][1000 genomes]
rs10899897	0.80[ASN][1000 genomes]
rs1107925	0.82[ASN][1000 genomes]
rs11238633	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238637	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12258494	0.84[ASN][1000 genomes]
rs12413246	0.98[ASN][1000 genomes]
rs12570501	0.82[ASN][1000 genomes]
rs1335894	0.84[ASN][1000 genomes]
rs1537797	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1537798	0.84[ASN][1000 genomes]
rs1572377	0.84[ASN][1000 genomes]
rs17154279	0.82[ASN][1000 genomes]
rs2050502	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4534528	0.83[ASN][1000 genomes]
rs4948759	0.84[ASN][1000 genomes]
rs4948766	0.82[ASN][1000 genomes]
rs58086514	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60407866	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101084	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs74138024	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74138025	0.82[ASN][1000 genomes]
rs7903170	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911606	0.82[ASN][1000 genomes]
rs883474	0.82[ASN][1000 genomes]
rs951259	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980446	0.84[ASN][1000 genomes]
rs980447	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44194800-44197800	Weak transcription	Spleen	Spleen
2	chr10:44195800-44203200	Weak transcription	Ovary	ovary
3	chr10:44196000-44198800	Weak transcription	Left Ventricle	heart
4	chr10:44196000-44203800	Weak transcription	Right Atrium	heart
5	chr10:44196400-44198200	Weak transcription	Fetal Heart	heart
6	chr10:44196800-44197400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44197000-44198400	Weak transcription	Right Ventricle	heart
8	chr10:44197200-44198600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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