Variant report

Variant	rs60407866
Chromosome Location	chr10:44206045-44206046
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10751332	0.94[ASN][1000 genomes]
rs10751337	0.93[ASN][1000 genomes]
rs10751343	0.83[ASN][1000 genomes]
rs10793470	0.91[ASN][1000 genomes]
rs10793471	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793476	0.94[ASN][1000 genomes]
rs10793483	0.82[ASN][1000 genomes]
rs10793484	0.83[ASN][1000 genomes]
rs10793489	0.82[ASN][1000 genomes]
rs10899861	0.93[ASN][1000 genomes]
rs10899864	0.94[ASN][1000 genomes]
rs10899890	0.85[ASN][1000 genomes]
rs10899891	0.83[ASN][1000 genomes]
rs10899893	0.83[ASN][1000 genomes]
rs10899894	0.83[ASN][1000 genomes]
rs10899897	0.85[ASN][1000 genomes]
rs10899900	0.82[ASN][1000 genomes]
rs10899901	0.82[ASN][1000 genomes]
rs1107925	0.86[ASN][1000 genomes]
rs11238633	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11238637	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238705	0.82[ASN][1000 genomes]
rs12218690	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12258494	0.88[ASN][1000 genomes]
rs12413246	0.94[ASN][1000 genomes]
rs12570501	0.86[ASN][1000 genomes]
rs1335894	0.88[ASN][1000 genomes]
rs1537797	0.88[ASN][1000 genomes]
rs1537798	0.88[ASN][1000 genomes]
rs1572377	0.88[ASN][1000 genomes]
rs17154279	0.86[ASN][1000 genomes]
rs2050502	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2050503	0.82[ASN][1000 genomes]
rs2297724	0.82[ASN][1000 genomes]
rs4080021	0.82[ASN][1000 genomes]
rs4245608	0.81[ASN][1000 genomes]
rs4534528	0.88[ASN][1000 genomes]
rs4948759	0.88[ASN][1000 genomes]
rs4948766	0.86[ASN][1000 genomes]
rs4948767	0.82[ASN][1000 genomes]
rs4948768	0.83[ASN][1000 genomes]
rs4948771	0.82[ASN][1000 genomes]
rs4948772	0.81[ASN][1000 genomes]
rs4948774	0.82[ASN][1000 genomes]
rs58086514	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101084	0.85[ASN][1000 genomes]
rs74138024	0.86[ASN][1000 genomes]
rs74138025	0.86[ASN][1000 genomes]
rs7903170	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7911606	0.86[ASN][1000 genomes]
rs883474	0.86[ASN][1000 genomes]
rs951259	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs951798	0.82[ASN][1000 genomes]
rs964877	0.82[ASN][1000 genomes]
rs980446	0.88[ASN][1000 genomes]
rs980447	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317585	chr10:44202846-44207644	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3521367	chr10:44203899-44206311	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3521366	chr10:44203996-44206694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3521368	chr10:44203996-44206694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3317596	chr10:44204136-44206172	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv14193	chr10:44204388-44206097	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3317607	chr10:44204492-44206069	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44203400-44207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44204200-44207000	Weak transcription	Spleen	Spleen

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