Variant report

Variant	rs11238633
Chromosome Location	chr10:44191839-44191840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10751332	0.88[ASN][1000 genomes]
rs10751337	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10793470	0.85[ASN][1000 genomes]
rs10793471	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10793476	0.89[CEU][hapmap]
rs10793480	0.81[CEU][hapmap]
rs10899861	0.87[ASN][1000 genomes]
rs10899864	0.88[ASN][1000 genomes]
rs10899908	0.90[CEU][hapmap]
rs11238637	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12218690	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12413246	0.88[ASN][1000 genomes]
rs17154279	0.90[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2050502	0.80[AMR][1000 genomes]
rs2152456	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4948776	0.89[CEU][hapmap]
rs60407866	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7903170	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs951259	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359960	chr10:44190546-44193444	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44186200-44193000	Weak transcription	Right Atrium	heart
2	chr10:44188000-44192800	Weak transcription	Lung	lung
3	chr10:44188000-44194600	Weak transcription	Ovary	ovary
4	chr10:44188000-44195000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44188000-44196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44188600-44192800	Weak transcription	Left Ventricle	heart
7	chr10:44189600-44195400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:44191200-44192400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:44191600-44192200	Active TSS	Spleen	Spleen
10	chr10:44191600-44192600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:44191800-44192400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:44191800-44192600	ZNF genes & repeats	Fetal Kidney	kidney
13	chr10:44191800-44196400	Enhancers	Fetal Heart	heart
14	chr10:44191800-44197000	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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