Variant report

Variant	rs10899908
Chromosome Location	chr10:44288727-44288728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44280117..44282923-chr10:44287063..44289824,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10751343	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793476	1.00[CEU][hapmap]
rs10793480	0.81[CEU][hapmap]
rs10793483	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793484	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793489	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793499	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899890	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899891	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899893	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899900	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899901	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899905	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899907	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899911	0.99[ASN][1000 genomes]
rs10899912	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899914	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899915	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1107925	0.80[AMR][1000 genomes]
rs11238705	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238713	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12258494	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12570501	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1335894	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1537797	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1537798	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1572377	0.83[AMR][1000 genomes]
rs17154279	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2050503	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2152456	1.00[CEU][hapmap]
rs2297724	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2863761	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4080021	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4245608	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4534528	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4948759	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4948766	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948767	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948768	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4948771	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948772	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948774	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948779	1.00[ASN][1000 genomes]
rs58086514	0.82[AMR][1000 genomes]
rs7071189	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7093062	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7093194	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101084	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74138024	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74138025	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs751464	1.00[ASN][1000 genomes]
rs751466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903170	1.00[CEU][hapmap]
rs7911606	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs883474	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs951798	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs964877	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs980446	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs980447	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
4	chr10:44286800-44289000	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44286800-44292400	Weak transcription	Ovary	ovary
6	chr10:44287000-44289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44287000-44289600	Weak transcription	Osteobl	bone
8	chr10:44287200-44289000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:44287600-44290000	Enhancers	Fetal Lung	lung
10	chr10:44288600-44290200	Enhancers	Fetal Muscle Leg	muscle

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