Variant report

Variant	rs10899912
Chromosome Location	chr10:44296893-44296894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10751343	0.85[EUR][1000 genomes]
rs10793476	1.00[CEU][hapmap]
rs10793480	0.81[CEU][hapmap]
rs10793483	0.80[EUR][1000 genomes]
rs10793484	0.85[EUR][1000 genomes]
rs10793489	0.89[EUR][1000 genomes]
rs10793499	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899890	0.80[EUR][1000 genomes]
rs10899891	0.80[EUR][1000 genomes]
rs10899900	0.88[EUR][1000 genomes]
rs10899901	0.89[EUR][1000 genomes]
rs10899905	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899907	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899908	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899911	0.92[ASN][1000 genomes]
rs10899914	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899915	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238705	0.89[EUR][1000 genomes]
rs11238713	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12258494	0.80[EUR][1000 genomes]
rs12570501	0.80[EUR][1000 genomes]
rs17154279	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2050503	0.89[EUR][1000 genomes]
rs2152456	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs2297724	0.89[EUR][1000 genomes]
rs2863761	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750725	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs4080021	0.89[EUR][1000 genomes]
rs4245608	0.82[EUR][1000 genomes]
rs4948766	0.80[EUR][1000 genomes]
rs4948767	0.80[EUR][1000 genomes]
rs4948771	0.89[EUR][1000 genomes]
rs4948772	0.89[EUR][1000 genomes]
rs4948774	0.89[EUR][1000 genomes]
rs4948776	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948779	0.93[ASN][1000 genomes]
rs7071189	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7093062	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093194	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7101084	0.85[EUR][1000 genomes]
rs74138024	0.80[EUR][1000 genomes]
rs74138025	0.80[EUR][1000 genomes]
rs751464	0.93[ASN][1000 genomes]
rs751466	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7903170	1.00[CEU][hapmap]
rs7911606	0.80[EUR][1000 genomes]
rs883474	0.80[EUR][1000 genomes]
rs951798	0.89[EUR][1000 genomes]
rs964877	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
2	chr10:44290000-44300600	Weak transcription	Osteobl	bone
3	chr10:44290000-44303200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:44292600-44304800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44293400-44300800	Weak transcription	Right Atrium	heart
6	chr10:44293400-44304600	Weak transcription	Ovary	ovary
7	chr10:44294800-44299400	Weak transcription	Right Ventricle	heart
8	chr10:44295000-44300600	Weak transcription	NHDF-Ad	bronchial
9	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
10	chr10:44296000-44300000	Weak transcription	Fetal Lung	lung
11	chr10:44296400-44297200	Enhancers	Primary T cells from cord blood	blood
12	chr10:44296400-44297400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44296600-44297200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:44296600-44297200	Enhancers	Fetal Stomach	stomach
15	chr10:44296600-44298200	Enhancers	Adipose Nuclei	Adipose
16	chr10:44296800-44297000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:44296800-44297000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:44296800-44297400	Enhancers	Placenta	Placenta

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