Variant report

Variant	rs10899901
Chromosome Location	chr10:44268473-44268474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44263232..44266045-chr10:44266505..44269774,3	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10751337	0.85[ASN][1000 genomes]
rs10751341	0.84[AMR][1000 genomes]
rs10751343	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793476	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10793482	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10793483	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793484	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793489	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793499	0.82[EUR][1000 genomes]
rs10899886	0.84[AMR][1000 genomes]
rs10899889	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10899890	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899891	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899893	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899894	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10899896	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10899897	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10899900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899905	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10899907	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899908	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899912	0.89[EUR][1000 genomes]
rs10899914	0.89[EUR][1000 genomes]
rs10899915	0.89[EUR][1000 genomes]
rs1107925	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238680	0.81[AMR][1000 genomes]
rs11238686	0.84[AMR][1000 genomes]
rs11238687	0.84[AMR][1000 genomes]
rs11238705	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238713	0.88[EUR][1000 genomes]
rs12258494	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12570501	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1335894	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1335895	0.84[AMR][1000 genomes]
rs1537797	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1537798	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1572377	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154279	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297724	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863761	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4080021	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4338479	0.84[AMR][1000 genomes]
rs4534528	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948759	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948762	0.83[AMR][1000 genomes]
rs4948766	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948767	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948768	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948771	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948772	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948776	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58086514	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60407866	0.82[ASN][1000 genomes]
rs7071189	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7093062	0.87[EUR][1000 genomes]
rs7093194	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7101084	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74138024	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74138025	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751466	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7901738	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7903170	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7911606	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7916533	0.85[AMR][1000 genomes]
rs7917980	0.84[AMR][1000 genomes]
rs883474	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs951798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980446	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs980447	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44267400-44269400	Weak transcription	Stomach Mucosa	stomach

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