Variant report

Variant	rs951798
Chromosome Location	chr10:44274445-44274446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr10:44273985-44274520	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
2	ESR1	chr10:44273956-44274482	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
3	ESR1	chr10:44273895-44274547	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
4	ESR1	chr10:44273982-44274522	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
5	ESR1	chr10:44274000-44274486	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341

Variant related genes	Relation type
ENSG00000234973	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10751337	0.85[ASN][1000 genomes]
rs10751341	0.84[AMR][1000 genomes]
rs10751343	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793476	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10793482	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10793483	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793484	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793489	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793499	0.82[EUR][1000 genomes]
rs10899886	0.84[AMR][1000 genomes]
rs10899889	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10899890	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899891	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899893	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899894	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10899896	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10899897	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10899900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899905	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10899907	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899908	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899912	0.89[EUR][1000 genomes]
rs10899914	0.89[EUR][1000 genomes]
rs10899915	0.89[EUR][1000 genomes]
rs1107925	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238680	0.81[AMR][1000 genomes]
rs11238686	0.84[AMR][1000 genomes]
rs11238687	0.84[AMR][1000 genomes]
rs11238705	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238713	0.88[EUR][1000 genomes]
rs12258494	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12570501	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1335894	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1335895	0.84[AMR][1000 genomes]
rs1537797	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1537798	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1572377	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154279	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297724	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863761	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4080021	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4338479	0.84[AMR][1000 genomes]
rs4534528	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948759	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948762	0.83[AMR][1000 genomes]
rs4948766	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948767	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948768	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948771	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948772	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948776	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58086514	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60407866	0.82[ASN][1000 genomes]
rs7071189	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7093062	0.87[EUR][1000 genomes]
rs7093194	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7101084	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74138024	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74138025	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751466	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7901738	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7903170	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7911606	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7916533	0.85[AMR][1000 genomes]
rs7917980	0.84[AMR][1000 genomes]
rs883474	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs964877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980446	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs980447	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44271200-44277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44271200-44277400	Weak transcription	Spleen	Spleen
3	chr10:44272000-44280800	Weak transcription	Right Atrium	heart
4	chr10:44272800-44277000	Weak transcription	Pancreas	Pancrea
5	chr10:44273000-44275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44273600-44274800	Enhancers	Primary T cells from cord blood	blood
7	chr10:44273800-44274600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:44273800-44277000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:44274000-44274600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:44274000-44274600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:44274000-44274600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:44274000-44274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:44274200-44274600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:44274200-44274600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr10:44274200-44274600	Enhancers	Fetal Thymus	thymus
16	chr10:44274200-44274600	Enhancers	Left Ventricle	heart
17	chr10:44274200-44274600	Enhancers	Psoas Muscle	Psoas
18	chr10:44274200-44274800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:44274200-44274800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:44274200-44274800	Enhancers	Lung	lung
21	chr10:44274200-44275000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr10:44274200-44275600	Enhancers	Stomach Mucosa	stomach
23	chr10:44274400-44276000	Enhancers	Gastric	stomach
24	chr10:44274400-44276600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:44274400-44277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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