Variant report

Variant	rs4948762
Chromosome Location	chr10:44236420-44236421
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44234395..44236438-chr10:44237736..44239409,2	K562	blood:

Variant related genes	Relation type
ENSG00000223746	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10751339	0.96[ASN][1000 genomes]
rs10751340	0.96[ASN][1000 genomes]
rs10751341	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751342	0.95[ASN][1000 genomes]
rs10751343	0.83[AMR][1000 genomes]
rs10793477	0.88[ASN][1000 genomes]
rs10793478	0.96[ASN][1000 genomes]
rs10793479	0.96[ASN][1000 genomes]
rs10793482	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793483	0.83[AMR][1000 genomes]
rs10793484	0.82[AMR][1000 genomes]
rs10793489	0.82[AMR][1000 genomes]
rs10793490	0.87[ASN][1000 genomes]
rs10899866	0.82[ASN][1000 genomes]
rs10899867	0.82[ASN][1000 genomes]
rs10899886	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899889	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899890	0.85[AMR][1000 genomes]
rs10899891	0.82[AMR][1000 genomes]
rs10899893	0.83[AMR][1000 genomes]
rs10899900	0.83[AMR][1000 genomes]
rs10899901	0.83[AMR][1000 genomes]
rs10899905	0.82[AMR][1000 genomes]
rs1107925	0.82[AMR][1000 genomes]
rs11238672	0.95[ASN][1000 genomes]
rs11238680	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238686	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238687	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238705	0.82[AMR][1000 genomes]
rs12258494	0.82[AMR][1000 genomes]
rs12570501	0.86[AMR][1000 genomes]
rs1335894	0.82[AMR][1000 genomes]
rs1335895	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335896	0.96[ASN][1000 genomes]
rs1537797	0.82[AMR][1000 genomes]
rs1537798	0.82[AMR][1000 genomes]
rs17154279	0.86[AMR][1000 genomes]
rs2050503	0.83[AMR][1000 genomes]
rs2297724	0.82[AMR][1000 genomes]
rs4080021	0.82[AMR][1000 genomes]
rs4245608	0.83[AMR][1000 genomes]
rs4338479	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4534528	0.82[AMR][1000 genomes]
rs4536161	0.92[ASN][1000 genomes]
rs4536162	0.92[ASN][1000 genomes]
rs4948756	0.96[ASN][1000 genomes]
rs4948758	0.94[ASN][1000 genomes]
rs4948759	0.82[AMR][1000 genomes]
rs4948766	0.85[AMR][1000 genomes]
rs4948767	0.86[AMR][1000 genomes]
rs4948768	0.85[AMR][1000 genomes]
rs4948771	0.82[AMR][1000 genomes]
rs4948772	0.82[AMR][1000 genomes]
rs4948773	0.91[ASN][1000 genomes]
rs4948774	0.83[AMR][1000 genomes]
rs7071189	0.82[AMR][1000 genomes]
rs7093194	0.82[AMR][1000 genomes]
rs7101084	0.83[AMR][1000 genomes]
rs74138024	0.82[AMR][1000 genomes]
rs74138025	0.85[AMR][1000 genomes]
rs7475934	0.86[ASN][1000 genomes]
rs7901738	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7911606	0.86[AMR][1000 genomes]
rs7916533	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917980	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871832	0.89[ASN][1000 genomes]
rs871833	0.89[ASN][1000 genomes]
rs883474	0.86[AMR][1000 genomes]
rs951798	0.83[AMR][1000 genomes]
rs964877	0.83[AMR][1000 genomes]
rs980445	0.96[ASN][1000 genomes]
rs980446	0.82[AMR][1000 genomes]
rs980447	0.83[AMR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links