Variant report

Variant	rs871833
Chromosome Location	chr10:44269501-44269502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44263854..44265815-chr10:44269130..44271073,2	K562	blood:
2	chr10:44263232..44266045-chr10:44266505..44269774,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10751339	0.91[ASN][1000 genomes]
rs10751340	0.91[ASN][1000 genomes]
rs10751341	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10751342	0.91[ASN][1000 genomes]
rs10751344	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10793477	0.84[ASN][1000 genomes]
rs10793478	0.91[ASN][1000 genomes]
rs10793479	0.91[ASN][1000 genomes]
rs10793482	0.91[ASN][1000 genomes]
rs10793484	0.80[AFR][1000 genomes]
rs10793490	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793491	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10793493	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10793494	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899865	0.80[EUR][1000 genomes]
rs10899866	0.80[ASN][1000 genomes]
rs10899867	0.81[ASN][1000 genomes]
rs10899886	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10899889	0.93[ASN][1000 genomes]
rs10899903	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10899904	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899910	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1107925	0.83[AFR][1000 genomes]
rs11238639	0.80[EUR][1000 genomes]
rs11238672	0.91[ASN][1000 genomes]
rs11238680	0.91[ASN][1000 genomes]
rs11238686	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11238687	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1335887	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1335888	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1335895	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1335896	0.91[ASN][1000 genomes]
rs1998747	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2094070	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2863762	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2902565	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2902566	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4338479	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4536161	0.97[ASN][1000 genomes]
rs4536162	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4948756	0.91[ASN][1000 genomes]
rs4948758	0.89[ASN][1000 genomes]
rs4948762	0.89[ASN][1000 genomes]
rs4948773	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7475934	0.87[ASN][1000 genomes]
rs7901738	0.91[ASN][1000 genomes]
rs7916533	0.91[ASN][1000 genomes]
rs7917980	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7922095	0.81[AMR][1000 genomes]
rs871832	1.00[ASN][1000 genomes]
rs980445	0.91[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44269000-44270000	Enhancers	HUVEC	blood vessel
2	chr10:44269400-44271800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links