Variant report

Variant	rs7916533
Chromosome Location	chr10:44235878-44235879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44231245..44233311-chr10:44233879..44236048,2	K562	blood:
2	chr10:44234395..44236438-chr10:44237736..44239409,2	K562	blood:

Variant related genes	Relation type
ENSG00000223746	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10751339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10751340	0.99[ASN][1000 genomes]
rs10751341	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751342	0.98[ASN][1000 genomes]
rs10751343	0.85[AMR][1000 genomes]
rs10793469	0.81[ASN][1000 genomes]
rs10793477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10793478	0.99[ASN][1000 genomes]
rs10793479	0.99[ASN][1000 genomes]
rs10793480	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10793482	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793483	0.85[AMR][1000 genomes]
rs10793484	0.86[AMR][1000 genomes]
rs10793489	0.83[AMR][1000 genomes]
rs10793490	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10899860	0.81[ASN][1000 genomes]
rs10899863	0.81[ASN][1000 genomes]
rs10899865	0.81[ASN][1000 genomes]
rs10899866	0.84[ASN][1000 genomes]
rs10899867	0.85[ASN][1000 genomes]
rs10899886	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899889	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899890	0.86[AMR][1000 genomes]
rs10899891	0.83[AMR][1000 genomes]
rs10899893	0.85[AMR][1000 genomes]
rs10899900	0.85[AMR][1000 genomes]
rs10899901	0.85[AMR][1000 genomes]
rs10899905	0.83[AMR][1000 genomes]
rs1107925	0.86[AMR][1000 genomes]
rs11238634	0.80[ASN][1000 genomes]
rs11238639	0.81[ASN][1000 genomes]
rs11238672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11238680	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238686	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238687	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238705	0.83[AMR][1000 genomes]
rs12258494	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12570501	0.87[AMR][1000 genomes]
rs1335894	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1335895	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335896	0.99[ASN][1000 genomes]
rs1467835	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1467836	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1467837	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1537797	0.83[AMR][1000 genomes]
rs1537798	0.86[AMR][1000 genomes]
rs1537800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1572377	0.83[AMR][1000 genomes]
rs17154279	0.87[AMR][1000 genomes]
rs2050502	0.82[ASN][1000 genomes]
rs2050503	0.85[AMR][1000 genomes]
rs2152456	0.95[MEX][hapmap]
rs2297724	0.83[AMR][1000 genomes]
rs4080021	0.83[AMR][1000 genomes]
rs4245608	0.85[AMR][1000 genomes]
rs4338479	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534528	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4536161	0.94[ASN][1000 genomes]
rs4536162	0.94[ASN][1000 genomes]
rs4948756	0.99[ASN][1000 genomes]
rs4948758	0.97[ASN][1000 genomes]
rs4948759	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4948762	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948766	0.86[AMR][1000 genomes]
rs4948767	0.87[AMR][1000 genomes]
rs4948768	0.86[AMR][1000 genomes]
rs4948771	0.83[AMR][1000 genomes]
rs4948772	0.83[AMR][1000 genomes]
rs4948773	0.92[ASN][1000 genomes]
rs4948774	0.85[AMR][1000 genomes]
rs7071189	0.83[AMR][1000 genomes]
rs7093194	0.83[AMR][1000 genomes]
rs7094994	0.81[ASN][1000 genomes]
rs7101084	0.85[AMR][1000 genomes]
rs74138024	0.83[AMR][1000 genomes]
rs74138025	0.86[AMR][1000 genomes]
rs7475934	0.87[ASN][1000 genomes]
rs7901738	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7903170	0.91[MEX][hapmap]
rs7911606	0.87[AMR][1000 genomes]
rs7917980	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922095	0.81[ASN][1000 genomes]
rs871832	0.91[ASN][1000 genomes]
rs871833	0.91[ASN][1000 genomes]
rs883474	0.87[AMR][1000 genomes]
rs951260	0.81[ASN][1000 genomes]
rs951798	0.85[AMR][1000 genomes]
rs964877	0.85[AMR][1000 genomes]
rs980445	0.99[ASN][1000 genomes]
rs980446	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs980447	0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7916533	GPRIN2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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