Variant report

Variant	rs10899910
Chromosome Location	chr10:44289302-44289303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:44289198-44289538	HepG2	liver:	n/a	chr10:44289396-44289407
2	FOS	chr10:44289237-44289506	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr10:44289141-44289464	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:44289156-44289521	U87	brain:	n/a	n/a
5	MAX	chr10:44289166-44290102	NB4	blood:	n/a	n/a
6	FOS	chr10:44289211-44289561	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:44289189-44289550	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr10:44289206-44290042	NB4	blood:	n/a	n/a
9	CEBPB	chr10:44289213-44289554	A549	lung:	n/a	chr10:44289396-44289407
10	STAT3	chr10:44289229-44289560	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr10:44289214-44289514	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr10:44289186-44289521	U87	brain:	n/a	n/a
13	FOS	chr10:44289255-44289487	MCF10A-Er-Src	breast:	n/a	n/a
14	E2F4	chr10:44289190-44289592	MCF10A-Er-Src	breast:	n/a	n/a
15	CEBPB	chr10:44289133-44289599	IMR90	lung:	n/a	chr10:44289396-44289407
16	MYC	chr10:44289147-44289462	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44280117..44282923-chr10:44287063..44289824,2	K562	blood:

Variant related genes	Relation type
HNRNPA3P1	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10751344	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751345	0.85[ASN][1000 genomes]
rs10793490	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10793491	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793492	0.84[ASN][1000 genomes]
rs10793493	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793494	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793495	1.00[ASN][1000 genomes]
rs10793496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10793497	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10793498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10899903	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899904	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899906	1.00[ASN][1000 genomes]
rs10899909	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10899913	0.95[ASN][1000 genomes]
rs10899916	0.88[ASN][1000 genomes]
rs10899917	0.84[ASN][1000 genomes]
rs12254433	0.88[ASN][1000 genomes]
rs1335887	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1335888	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1537796	0.84[ASN][1000 genomes]
rs1540966	0.84[ASN][1000 genomes]
rs1540968	0.84[ASN][1000 genomes]
rs1998747	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2009557	0.98[ASN][1000 genomes]
rs2094070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863760	0.95[ASN][1000 genomes]
rs2863762	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2902565	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2902566	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3750724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3901013	0.87[ASN][1000 genomes]
rs4245609	0.95[CEU][hapmap]
rs4245610	0.84[ASN][1000 genomes]
rs4948777	1.00[ASN][1000 genomes]
rs4948778	1.00[ASN][1000 genomes]
rs6593368	1.00[ASN][1000 genomes]
rs7077599	1.00[ASN][1000 genomes]
rs7910172	1.00[ASN][1000 genomes]
rs7910184	1.00[ASN][1000 genomes]
rs7916028	0.84[ASN][1000 genomes]
rs7922745	0.84[ASN][1000 genomes]
rs871833	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
4	chr10:44286800-44292400	Weak transcription	Ovary	ovary
5	chr10:44287000-44289600	Weak transcription	Osteobl	bone
6	chr10:44287600-44290000	Enhancers	Fetal Lung	lung
7	chr10:44288600-44290200	Enhancers	Fetal Muscle Leg	muscle
8	chr10:44289000-44289800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44289000-44290000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:44289000-44290000	Enhancers	NHDF-Ad	bronchial
11	chr10:44289000-44290200	Enhancers	Adipose Nuclei	Adipose
12	chr10:44289000-44290800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44289000-44290800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44289200-44289600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr10:44289200-44289600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:44289200-44289800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:44289200-44289800	Enhancers	NHLF	lung
18	chr10:44289200-44290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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