Variant report

Variant	rs12254433
Chromosome Location	chr10:44299045-44299046
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44298175..44301035-chr10:44302749..44304944,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10793495	0.88[ASN][1000 genomes]
rs10793496	0.88[ASN][1000 genomes]
rs10793497	0.88[ASN][1000 genomes]
rs10793498	0.88[ASN][1000 genomes]
rs10899906	0.88[ASN][1000 genomes]
rs10899909	0.88[ASN][1000 genomes]
rs10899910	0.88[ASN][1000 genomes]
rs10899913	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899917	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12220592	0.86[ASN][1000 genomes]
rs1537796	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540966	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540968	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009557	0.86[ASN][1000 genomes]
rs2094070	0.88[ASN][1000 genomes]
rs2863760	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750724	0.88[ASN][1000 genomes]
rs4245610	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948579	0.85[AFR][1000 genomes]
rs4948777	0.88[ASN][1000 genomes]
rs4948778	0.88[ASN][1000 genomes]
rs6593368	0.88[ASN][1000 genomes]
rs7077599	0.88[ASN][1000 genomes]
rs7900896	0.85[AFR][1000 genomes]
rs7905888	0.85[AFR][1000 genomes]
rs7910172	0.88[ASN][1000 genomes]
rs7910184	0.88[ASN][1000 genomes]
rs7916028	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7922745	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
2	chr10:44290000-44300600	Weak transcription	Osteobl	bone
3	chr10:44290000-44303200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:44292600-44304800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44293400-44300800	Weak transcription	Right Atrium	heart
6	chr10:44293400-44304600	Weak transcription	Ovary	ovary
7	chr10:44294800-44299400	Weak transcription	Right Ventricle	heart
8	chr10:44295000-44300600	Weak transcription	NHDF-Ad	bronchial
9	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
10	chr10:44296000-44300000	Weak transcription	Fetal Lung	lung
11	chr10:44297000-44300400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44297200-44302800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:44297600-44299400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:44297600-44302800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:44298200-44300200	Weak transcription	Adipose Nuclei	Adipose

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