Variant report

Variant	rs10793499
Chromosome Location	chr10:44305838-44305839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10751343	0.80[EUR][1000 genomes]
rs10793476	1.00[CEU][hapmap]
rs10793480	0.81[CEU][hapmap]
rs10793484	0.80[EUR][1000 genomes]
rs10793489	0.82[EUR][1000 genomes]
rs10899900	0.80[EUR][1000 genomes]
rs10899901	0.82[EUR][1000 genomes]
rs10899905	0.82[EUR][1000 genomes]
rs10899907	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899908	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899911	0.82[ASN][1000 genomes]
rs10899912	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899914	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899915	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238705	0.82[EUR][1000 genomes]
rs11238713	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17154279	1.00[CEU][hapmap]
rs2050503	0.82[EUR][1000 genomes]
rs2152456	1.00[CEU][hapmap]
rs2297724	0.82[EUR][1000 genomes]
rs2863761	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3750725	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4080021	0.82[EUR][1000 genomes]
rs4948771	0.82[EUR][1000 genomes]
rs4948772	0.82[EUR][1000 genomes]
rs4948774	0.82[EUR][1000 genomes]
rs4948776	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948779	0.83[ASN][1000 genomes]
rs7071189	0.84[EUR][1000 genomes]
rs7093062	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093194	0.84[EUR][1000 genomes]
rs7101084	0.80[EUR][1000 genomes]
rs751464	0.83[ASN][1000 genomes]
rs751466	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903170	1.00[CEU][hapmap]
rs951798	0.82[EUR][1000 genomes]
rs964877	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
2	chr10:44300600-44307400	Enhancers	Osteobl	bone
3	chr10:44300800-44306000	Weak transcription	Fetal Lung	lung
4	chr10:44301400-44307200	Enhancers	Primary T cells from cord blood	blood
5	chr10:44303000-44307400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44303600-44311000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:44304000-44311000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:44304200-44306200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:44304200-44309800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:44304200-44310000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:44304200-44310400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:44304200-44310400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:44304200-44310600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:44304200-44310800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:44304200-44311000	Weak transcription	Thymus	Thymus
16	chr10:44304800-44306400	Enhancers	Fetal Kidney	kidney
17	chr10:44305200-44306000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:44305200-44306200	Weak transcription	HUVEC	blood vessel
19	chr10:44305200-44307200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:44305200-44310400	Weak transcription	Fetal Thymus	thymus
21	chr10:44305200-44310600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:44305200-44311800	Weak transcription	Right Atrium	heart
23	chr10:44305200-44312000	Weak transcription	Ovary	ovary
24	chr10:44305200-44312200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:44305400-44306600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:44305400-44309600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:44305400-44309600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:44305400-44309600	Weak transcription	NHLF	lung
29	chr10:44305400-44311600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:44305600-44306000	Weak transcription	Dnd41	blood
31	chr10:44305600-44309400	Weak transcription	NHDF-Ad	bronchial
32	chr10:44305600-44311200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:44305600-44311200	Weak transcription	Aorta	Aorta
34	chr10:44305800-44306000	Enhancers	Skeletal Muscle Male	skeletal muscle

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