Variant report

Variant	rs3750725
Chromosome Location	chr10:44285921-44285922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:44285881-44285931	MCF-7	breast:	n/a
2	chr10:44285881-44285931	PrEC	prostate:	n/a
3	chr10:44285881-44285931	HNPCEpiC	eye:	n/a
4	chr10:44285881-44285931	HAEpiC	amniotic membrane:	n/a
5	chr10:44285881-44285931	HepG2	liver:	n/a
6	chr10:44285881-44285931	SAEC	small airway:	n/a
7	chr10:44285881-44285931	SK-N-SH	brain:	n/a
8	chr10:44285881-44285931	HEEpiC	esophagus:	n/a
9	chr10:44285881-44285931	Caco-2	colon:	n/a
10	chr10:44285881-44285931	NHDF-neo	bronchial:	n/a
11	chr10:44285881-44285931	GM12892	blood:	n/a
12	chr10:44285881-44285931	HIPEpiC	eye:	n/a
13	chr10:44285881-44285931	AG04450	lung:	fetal
14	chr10:44285881-44285931	IMR90	lung:	fetal
15	chr10:44285881-44285931	Jurkat	blood:	n/a
16	chr10:44285881-44285931	CMK	blood:	n/a
17	chr10:44285881-44285931	SKMC	muscle:	n/a
18	chr10:44285881-44285931	HRE	kidney:	n/a
19	chr10:44285881-44285931	SK-N-SH_RA	brain:	n/a
20	chr10:44285881-44285931	LNCaP	prostate:	n/a
21	chr10:44285881-44285931	K562	blood:	n/a
22	chr10:44285881-44285931	A549	lung:	n/a
23	chr10:44285881-44285931	GM12878	blood:	n/a
24	chr10:44285881-44285931	HEK293	kidney:	embryo
25	chr10:44285881-44285931	GM06990	blood:	n/a
26	chr10:44285881-44285931	HCF	heart:	n/a
27	chr10:44285881-44285931	BJ	skin:	n/a
28	chr10:44285881-44285931	NH-A	brain:	n/a
29	chr10:44285881-44285931	NT2-D1	testis:	n/a
30	chr10:44285881-44285931	ECC-1	luminal epithelium:	n/a
31	chr10:44285881-44285931	HPAEpiC	pulmonary alveolar:	n/a
32	chr10:44285881-44285931	AG04449	skin:	fetal
33	chr10:44285881-44285931	HCM	heart:	n/a
34	chr10:44285881-44285931	Hela-S3	cervix:	n/a
35	chr10:44285881-44285931	ovcar-3	ovarian:	n/a
36	chr10:44285881-44285931	GM19239	blood:	n/a
37	chr10:44285881-44285931	HL-60	blood:	n/a
38	chr10:44285881-44285931	GM12891	blood:	n/a
39	chr10:44285881-44285931	ProgFib	skin:	n/a
40	chr10:44285881-44285931	AoSMC	blood vessel:	n/a
41	chr10:44285881-44285931	HUVEC	blood vessel:	n/a
42	chr10:44285881-44285931	AG09319	gingival:	n/a
43	chr10:44285881-44285931	RPTEC	kidney:	n/a
44	chr10:44285881-44285931	HCT-116	colon:	n/a
45	chr10:44285881-44285931	H1-hESC	embryonic stem cell:	embryo
46	chr10:44285881-44285931	U87	brain:	n/a
47	chr10:44285881-44285931	HRPEpiC	eye:	n/a
48	chr10:44285881-44285931	PANC-1	pancreas:	n/a
49	chr10:44285881-44285931	AG10803	skin:	n/a
50	chr10:44285881-44285931	HCPEpiC	choroid plexus:	n/a

No data

Variant related genes	Relation type
HNRNPA3P1	CpG island

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10793489	0.81[AMR][1000 genomes]
rs10793499	0.83[ASN][1000 genomes]
rs10899891	0.84[AMR][1000 genomes]
rs10899905	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10899907	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10899908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10899911	0.99[ASN][1000 genomes]
rs10899912	0.93[ASN][1000 genomes]
rs10899914	0.89[ASN][1000 genomes]
rs10899915	0.89[ASN][1000 genomes]
rs11238705	0.81[AMR][1000 genomes]
rs11238713	0.92[ASN][1000 genomes]
rs1537797	0.84[AMR][1000 genomes]
rs2297724	0.81[AMR][1000 genomes]
rs2863761	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4080021	0.84[AMR][1000 genomes]
rs4948771	0.81[AMR][1000 genomes]
rs4948772	0.81[AMR][1000 genomes]
rs4948776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4948779	1.00[ASN][1000 genomes]
rs7071189	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7093062	0.89[ASN][1000 genomes]
rs7093194	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74138024	0.84[AMR][1000 genomes]
rs751464	1.00[ASN][1000 genomes]
rs751466	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs980447	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947899	chr10:44283049-44286085	Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3750725	LOC338579	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44285800-44286000	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links