Variant report

Variant	rs12412766
Chromosome Location	chr10:90175135-90175136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10509545	1.00[ASN][1000 genomes]
rs12411841	1.00[ASN][1000 genomes]
rs12412793	0.83[ASN][1000 genomes]
rs12414838	1.00[ASN][1000 genomes]
rs12569919	0.91[ASN][1000 genomes]
rs12572530	0.90[ASN][1000 genomes]
rs12573401	0.90[ASN][1000 genomes]
rs1342454	1.00[ASN][1000 genomes]
rs17096268	1.00[ASN][1000 genomes]
rs17111348	0.90[ASN][1000 genomes]
rs1857157	1.00[ASN][1000 genomes]
rs4934405	1.00[ASN][1000 genomes]
rs4934412	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90171400-90175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:90171800-90177000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:90173200-90175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:90173400-90175400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:90173600-90175400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:90174000-90175400	Weak transcription	GM12878-XiMat	blood
7	chr10:90174600-90175800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:90175000-90175800	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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