Variant report

Variant	rs12412917
Chromosome Location	chr10:21712521-21712522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10828243	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12248483	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12776687	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34017213	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482181	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67206878	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7067553	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7070904	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7087431	0.80[EUR][1000 genomes]
rs7899812	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7922464	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs959652	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21707200-21716600	Weak transcription	A549	lung
2	chr10:21707400-21713400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:21707400-21716800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:21708400-21712800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:21708400-21714000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21710400-21713400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:21710600-21712800	Weak transcription	NHDF-Ad	bronchial
8	chr10:21710600-21716600	Weak transcription	NHEK	skin
9	chr10:21711200-21713400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:21711200-21717600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:21711400-21712600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:21712400-21715800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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