Variant report

Variant	rs7087431
Chromosome Location	chr10:21699324-21699325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10828243	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594201	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12248483	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12412917	0.80[EUR][1000 genomes]
rs12776687	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2360051	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34017213	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482181	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67206878	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7067553	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7070904	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7895825	0.82[ASN][1000 genomes]
rs7899812	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7900593	0.82[ASN][1000 genomes]
rs7907233	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7922464	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs959652	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9664320	0.82[ASN][1000 genomes]
rs985520	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21696800-21699400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:21697600-21706200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21698800-21699400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21699200-21699400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:21699200-21699400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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