Variant report

Variant	rs959652
Chromosome Location	chr10:21721758-21721759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21719925..21723047-chr10:21821739..21824712,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10047291	0.86[EUR][1000 genomes]
rs10047346	0.83[EUR][1000 genomes]
rs10082390	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828243	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11012716	0.83[EUR][1000 genomes]
rs11012717	0.83[EUR][1000 genomes]
rs11592490	0.81[ASN][1000 genomes]
rs11592976	0.81[ASN][1000 genomes]
rs11594201	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11594724	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11596452	0.81[ASN][1000 genomes]
rs12098603	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12248483	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12249704	0.85[EUR][1000 genomes]
rs12412917	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12776687	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16921815	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2360051	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34017213	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34449603	0.82[EUR][1000 genomes]
rs58747541	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6482181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66491474	0.81[ASN][1000 genomes]
rs67206878	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7067553	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7070904	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7074328	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7080252	0.85[EUR][1000 genomes]
rs7087431	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7098776	0.83[EUR][1000 genomes]
rs72794816	0.81[ASN][1000 genomes]
rs7895825	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7899812	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900593	0.93[ASN][1000 genomes]
rs7907233	0.84[EUR][1000 genomes]
rs7922464	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9664320	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21720200-21722400	Enhancers	Placenta	Placenta
2	chr10:21720600-21722200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:21720600-21722200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:21720800-21722000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:21720800-21722000	Enhancers	HMEC	breast
6	chr10:21721000-21721800	Enhancers	NHEK	skin
7	chr10:21721200-21722000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:21721400-21722000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:21721400-21722800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:21721600-21723400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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