Variant report

Variant	rs11596452
Chromosome Location	chr10:21754786-21754787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047291	0.83[EUR][1000 genomes]
rs10047346	0.80[EUR][1000 genomes]
rs10082390	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10508638	0.87[EUR][1000 genomes]
rs11012712	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11012714	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11012716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012717	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012718	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11592490	0.85[ASN][1000 genomes]
rs11592976	0.85[ASN][1000 genomes]
rs11594201	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594724	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12098603	0.82[EUR][1000 genomes]
rs12761415	0.80[EUR][1000 genomes]
rs12763166	0.83[EUR][1000 genomes]
rs12767504	0.86[EUR][1000 genomes]
rs12767955	0.84[EUR][1000 genomes]
rs12770245	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12775112	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12776518	0.89[EUR][1000 genomes]
rs12781438	0.82[EUR][1000 genomes]
rs12783805	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16921815	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34119904	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34449603	0.82[EUR][1000 genomes]
rs35708372	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58747541	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61850011	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61850014	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482181	0.81[ASN][1000 genomes]
rs66491474	0.85[ASN][1000 genomes]
rs67332292	0.82[ASN][1000 genomes]
rs7074328	0.83[ASN][1000 genomes]
rs7080252	0.82[EUR][1000 genomes]
rs7098776	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71491182	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72794816	0.85[ASN][1000 genomes]
rs7895825	0.87[ASN][1000 genomes]
rs7899812	0.83[ASN][1000 genomes]
rs7900593	0.83[ASN][1000 genomes]
rs959652	0.81[ASN][1000 genomes]
rs9664320	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21738600-21762000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21754000-21761400	Weak transcription	Right Atrium	heart

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