Variant report

Variant	rs10508638
Chromosome Location	chr10:21743662-21743663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21738096..21741227-chr10:21742837..21745484,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10828252	1.00[CHB][hapmap]
rs11012712	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11012714	0.94[EUR][1000 genomes]
rs11012718	0.92[EUR][1000 genomes]
rs11012737	1.00[CHB][hapmap]
rs11596452	0.87[EUR][1000 genomes]
rs12098603	0.81[EUR][1000 genomes]
rs12357321	1.00[CHB][hapmap]
rs1269454	1.00[CHB][hapmap]
rs12761415	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12763166	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767504	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767955	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768155	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12769344	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12770228	1.00[CHB][hapmap]
rs12770245	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770588	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12775103	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12775112	0.94[EUR][1000 genomes]
rs12775448	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12776518	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12781438	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12783805	0.94[EUR][1000 genomes]
rs16921773	1.00[CHB][hapmap]
rs16921779	1.00[CHB][hapmap]
rs2026092	1.00[CHB][hapmap]
rs34119904	0.86[EUR][1000 genomes]
rs35708372	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850011	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850014	0.93[EUR][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs71491182	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946711	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21738600-21762000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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