Variant report

Variant	rs12775448
Chromosome Location	chr10:21701220-21701221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508638	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11012712	0.82[EUR][1000 genomes]
rs11012714	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11012718	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12098603	0.88[EUR][1000 genomes]
rs12761415	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12761995	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12763166	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12764780	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764850	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12767504	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12767955	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12768155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769344	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770245	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12770588	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12771156	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12775103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775112	0.84[EUR][1000 genomes]
rs12776518	0.80[EUR][1000 genomes]
rs12780653	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781438	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12782732	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783571	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783805	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1416903	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35097657	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35156049	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35708372	0.83[EUR][1000 genomes]
rs4399235	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61850011	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61850014	0.82[EUR][1000 genomes]
rs71491182	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs985519	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs985520	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21697600-21706200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:21699800-21707600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:21701200-21701400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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