Variant report

Variant	rs12771156
Chromosome Location	chr10:21696753-21696754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21696011..21697636-chr10:21729185..21730963,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828252	1.00[CHB][hapmap]
rs11012737	1.00[CHB][hapmap]
rs12357321	1.00[CHB][hapmap]
rs12761415	0.83[EUR][1000 genomes]
rs12761995	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12764780	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12764850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767955	0.80[EUR][1000 genomes]
rs12768155	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769344	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12770228	1.00[CHB][hapmap]
rs12770588	0.81[EUR][1000 genomes]
rs12775103	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12775448	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12780653	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12782732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12783571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416903	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921773	1.00[CHB][hapmap]
rs16921779	1.00[CHB][hapmap]
rs35097657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35156049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4399235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs946711	1.00[CHB][hapmap]
rs985519	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985520	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21691600-21699200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:21695200-21697000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:21695200-21697200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:21695200-21698800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21695400-21696800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:21695400-21697000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:21695600-21696800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr10:21695600-21696800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:21695600-21696800	Enhancers	K562	blood
12	chr10:21695600-21697400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:21696000-21697400	Enhancers	A549	lung
14	chr10:21696200-21697000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:21696200-21697800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:21696400-21696800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:21696400-21696800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:21696400-21696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:21696400-21696800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:21696400-21697000	Enhancers	HSMMtube	muscle
21	chr10:21696400-21697400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:21696600-21697000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr10:21696600-21697200	Enhancers	H1 Cell Line	embryonic stem cell

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