Variant report

Variant	rs12761995
Chromosome Location	chr10:21690509-21690510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21685726..21688565-chr10:21689801..21692612,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12761415	0.82[EUR][1000 genomes]
rs12764780	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12764850	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12768155	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12769344	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12771156	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12775103	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12775448	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12780653	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12782732	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12783571	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1416903	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35097657	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35156049	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4399235	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs985519	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs985520	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21683400-21691200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:21683400-21691200	Weak transcription	Right Atrium	heart
4	chr10:21684200-21696000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:21687000-21692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:21687200-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:21688000-21692200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:21688000-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:21688200-21690600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:21688400-21692200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:21688400-21695400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:21688800-21691200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:21688800-21691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:21688800-21691200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:21688800-21691600	Weak transcription	Hela-S3	cervix
16	chr10:21689000-21691200	Weak transcription	NHLF	lung
17	chr10:21689000-21691400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:21689000-21691400	Weak transcription	Fetal Heart	heart
19	chr10:21689000-21691600	Weak transcription	Fetal Lung	lung
20	chr10:21689000-21692000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:21689000-21692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:21689200-21691000	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:21689200-21691000	Weak transcription	Fetal Stomach	stomach
24	chr10:21689200-21691400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:21689200-21691400	Weak transcription	HSMMtube	muscle
26	chr10:21689200-21692000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:21689200-21692600	Weak transcription	Placenta	Placenta
28	chr10:21689200-21695600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:21689600-21691200	Weak transcription	NH-A	brain
30	chr10:21689600-21691400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:21689600-21691600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:21689600-21692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:21689800-21690800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr10:21689800-21691600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:21690000-21693200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr10:21690200-21691200	Weak transcription	NHDF-Ad	bronchial
37	chr10:21690200-21691200	Weak transcription	NHEK	skin
38	chr10:21690200-21691400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:21690200-21691400	Weak transcription	HMEC	breast
40	chr10:21690200-21691400	Weak transcription	Osteobl	bone
41	chr10:21690200-21691600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:21690400-21691200	Weak transcription	A549	lung
43	chr10:21690400-21692200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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