Variant report

Variant	rs12764850
Chromosome Location	chr10:21695932-21695933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828252	1.00[CHB][hapmap]
rs11012737	1.00[CHB][hapmap]
rs12357321	1.00[CHB][hapmap]
rs12761415	0.83[EUR][1000 genomes]
rs12761995	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12764780	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12767955	0.80[EUR][1000 genomes]
rs12768155	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769344	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12770228	1.00[CHB][hapmap]
rs12770588	0.81[EUR][1000 genomes]
rs12771156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775103	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12775448	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12780653	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12782732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12783571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416903	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921773	1.00[CHB][hapmap]
rs16921779	1.00[CHB][hapmap]
rs35097657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35156049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4399235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs946711	1.00[CHB][hapmap]
rs985519	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985520	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21684200-21696000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21691600-21699200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:21691800-21696400	Weak transcription	HSMMtube	muscle
4	chr10:21692000-21696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:21692200-21696400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21692600-21696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:21692800-21696000	Weak transcription	A549	lung
8	chr10:21693000-21696200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:21693200-21696200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:21695000-21696200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:21695000-21696600	Enhancers	NH-A	brain
12	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:21695200-21696400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:21695200-21696400	Enhancers	NHEK	skin
16	chr10:21695200-21697000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:21695200-21697200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:21695200-21698800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:21695400-21696200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:21695400-21696200	Enhancers	Dnd41	blood
21	chr10:21695400-21696400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:21695400-21696400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:21695400-21696400	Enhancers	HUVEC	blood vessel
24	chr10:21695400-21696600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:21695400-21696600	Enhancers	Osteobl	bone
26	chr10:21695400-21696800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:21695400-21697000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:21695600-21696000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:21695600-21696000	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr10:21695600-21696200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:21695600-21696200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:21695600-21696200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:21695600-21696200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:21695600-21696200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:21695600-21696200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:21695600-21696200	Enhancers	Fetal Thymus	thymus
37	chr10:21695600-21696400	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr10:21695600-21696400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:21695600-21696600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:21695600-21696800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr10:21695600-21696800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr10:21695600-21696800	Enhancers	K562	blood
43	chr10:21695600-21697400	Enhancers	HUES48 Cell Line	embryonic stem cell

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