Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21690682..21692820-chr10:21708808..21711419,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10508638	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10828252	1.00[CHB][hapmap]
rs11012712	0.81[EUR][1000 genomes]
rs11012714	0.82[EUR][1000 genomes]
rs11012718	0.80[EUR][1000 genomes]
rs11012737	1.00[CHB][hapmap]
rs12098603	0.86[EUR][1000 genomes]
rs12357321	1.00[CHB][hapmap]
rs12761415	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12763166	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12764850	0.81[EUR][1000 genomes]
rs12767504	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12767955	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12768155	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12769344	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12770228	1.00[CHB][hapmap]
rs12770245	0.82[EUR][1000 genomes]
rs12771156	0.81[EUR][1000 genomes]
rs12775103	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12775112	0.82[EUR][1000 genomes]
rs12775448	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12780653	0.81[EUR][1000 genomes]
rs12781438	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782732	0.81[EUR][1000 genomes]
rs12783571	0.81[EUR][1000 genomes]
rs12783805	0.82[EUR][1000 genomes]
rs1416903	0.81[EUR][1000 genomes]
rs16921773	1.00[CHB][hapmap]
rs16921779	1.00[CHB][hapmap]
rs35097657	0.81[EUR][1000 genomes]
rs35156049	0.81[EUR][1000 genomes]
rs35708372	0.81[EUR][1000 genomes]
rs61850011	0.82[EUR][1000 genomes]
rs61850014	0.81[EUR][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs71491182	0.82[EUR][1000 genomes]
rs946711	1.00[CHB][hapmap]
rs985519	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12770588	STAM	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21706800-21710200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21707200-21716600	Weak transcription	A549	lung
3	chr10:21707400-21710800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:21707400-21713400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:21707400-21716800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:21707800-21710800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21708000-21712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:21708400-21709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:21708400-21709800	Weak transcription	NHEK	skin
10	chr10:21708400-21712800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:21708400-21714000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:21708600-21709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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