Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21761122..21762841-chr10:21776967..21778734,2	K562	blood:
2	chr10:21760699..21762516-chr10:22607604..22609933,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508638	0.93[EUR][1000 genomes]
rs11012712	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012714	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012718	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596452	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12219756	0.83[ASN][1000 genomes]
rs12761415	0.85[EUR][1000 genomes]
rs12763166	0.89[EUR][1000 genomes]
rs12767504	0.91[EUR][1000 genomes]
rs12767955	0.89[EUR][1000 genomes]
rs12768155	0.82[EUR][1000 genomes]
rs12769344	0.82[EUR][1000 genomes]
rs12770245	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12770588	0.81[EUR][1000 genomes]
rs12775103	0.82[EUR][1000 genomes]
rs12775112	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775448	0.82[EUR][1000 genomes]
rs12776518	0.94[EUR][1000 genomes]
rs12781438	0.87[EUR][1000 genomes]
rs12783805	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34119904	0.90[EUR][1000 genomes]
rs35708372	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850011	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71491182	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21738600-21762000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21761200-21762200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21761200-21762200	Weak transcription	A549	lung
4	chr10:21761200-21762400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:21761400-21762000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:21761600-21762800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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