Variant report

Variant	rs12764780
Chromosome Location	chr10:21695372-21695373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12761995	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12764850	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12768155	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12769344	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771156	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12775103	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775448	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780653	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782732	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783571	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416903	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35097657	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35156049	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399235	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs985519	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs985520	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21684200-21696000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21688400-21695400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:21689200-21695600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:21691600-21699200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:21691800-21695400	Weak transcription	Osteobl	bone
6	chr10:21691800-21695600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:21691800-21695600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:21691800-21696400	Weak transcription	HSMMtube	muscle
9	chr10:21692000-21695600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:21692000-21695600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:21692000-21696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:21692200-21695400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:21692200-21696400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:21692600-21695600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:21692600-21696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:21692800-21696000	Weak transcription	A549	lung
17	chr10:21693000-21695600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:21693000-21696200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:21693200-21696200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:21695000-21695400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr10:21695000-21696200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:21695000-21696600	Enhancers	NH-A	brain
23	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:21695000-21696800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:21695200-21695400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:21695200-21696400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:21695200-21696400	Enhancers	NHEK	skin
28	chr10:21695200-21697000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr10:21695200-21697200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:21695200-21698800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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