Variant report

Variant	rs10082390
Chromosome Location	chr10:21753727-21753728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10047291	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10047346	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828243	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11012716	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11012717	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592490	0.89[ASN][1000 genomes]
rs11592976	0.89[ASN][1000 genomes]
rs11594201	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11594724	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596452	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12248483	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12249704	0.87[EUR][1000 genomes]
rs12776687	0.82[EUR][1000 genomes]
rs16921815	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2360051	0.80[ASN][1000 genomes]
rs34017213	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34119904	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34449603	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58747541	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482181	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66491474	0.89[ASN][1000 genomes]
rs67206878	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67332292	0.86[ASN][1000 genomes]
rs7067553	0.82[EUR][1000 genomes]
rs7070904	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7074328	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7080252	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098776	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72794816	0.89[ASN][1000 genomes]
rs7895825	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7899812	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7900593	0.91[ASN][1000 genomes]
rs7912634	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7922464	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs959652	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9664320	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv3502350	chr10:21753294-21753807	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	esv3502351	chr10:21753320-21753759	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21738600-21762000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21752400-21754000	Enhancers	Placenta	Placenta
3	chr10:21752600-21753800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:21752600-21754000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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